Biology & Life Sciences

RosettaCon 2010

Published June 8, 2016 Partnered Collections

The Rosetta framework for macromolecular modeling, prediction and design is a widely used code (over 7,000 registered groups) with a large, dynamic developer community. The Rosetta community, which includes developers and users from industry and academia, meets once a year to discuss improvements to Rosetta, new applications of the Rosetta code to biological and chemical problems, and core code development. This special collection presents recent developments from the Rosetta community, drawn from the groups participating in RosettaCon 2010. It focuses on the publication of both the science and the reproducible computational workflow: each paper is accompanied by an annotated archive containing the code, scripts and data-sets needed to carry out the computational protocol described in the paper.

Image Credit: journal.pone.0023947

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From the Blogs
Overview
Research Articles

From the Blogs

Image credit
Chris Poultney, Richard Bonneau, New York University

EveryONE PLoS ONE Launches the RosettaCon 2010 Collection
September 1, 2011 Jen Laloup

Overview

Image credit
Chris Poultney, Richard Bonneau, New York University

PLOS ONE The 2010 Rosetta Developers Meeting: Macromolecular Prediction and Design Meets Reproducible Publishing
August 31, 2011 P. Douglas Renfrew, Gabrielle Campbell, Charlie Strauss, Richard Bonneau

Research Articles

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10.1371/journal.pone.0032637

PLOS ONE Incorporation of Noncanonical Amino Acids into Rosetta and Use in Computational Protein-Peptide Interface Design
March 14, 2012 Paul Renfrew, Eun Jung Choi, Richard Bonneau, Brian Kuhlman
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10.1371/journal.pone.0023947

PLOS ONE Rational Design of Temperature-Sensitive Alleles Using Computational Structure Prediction
September 2, 2011 Christopher Poultney, Glenn Butterfoss, Michelle Gutwein, Kevin Drew, David Gresham, Kristin Gunsalus, Dennis Shasha, Richard Bonneau
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10.1371/journal.pone.0024109

PLOS ONE RosettaRemodel: A Generalized Framework for Flexible Backbone Protein Design
August 31, 2011 Po-Ssu Huang, Yih-En Ban, Florian Richter, Ingemar Andre, Robert Vernon, William Schief, David Baker
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10.1371/journal.pone.0023294

PLOS ONE Generalized Fragment Picking in Rosetta: Design, Protocols and Applications
August 24, 2011 Dominik Gront, Daniel Kulp, Robert Vernon, Charlie Strauss, David Baker
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10.1371/journal.pone.0021931

PLOS ONE Real-Time PyMOL Visualization for Rosetta and PyRosetta
August 16, 2011 Evan Baugh, Sergey Lyskov, Brian Weitzner, Jeffrey Gray
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10.1371/journal.pone.0022477

PLOS ONE Benchmarking and Analysis of Protein Docking Performance in Rosetta v3.2
August 2, 2011 Sidhartha Chaudhury, Monica Berrondo, Brian Weitzner, Pravin Muthu, Hannah Bergman, Jeffrey Gray
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10.1371/journal.pone.0022060

PLOS ONE Modeling Disordered Regions in Proteins Using Rosetta
July 29, 2011 Ray Yu-Ruei Wang, Yan Han, Kristina Krassovsky, William Sheffler, Michael Tyka, David Baker
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10.1371/journal.pone.0020451

PLOS ONE Predicting the Tolerated Sequences for Proteins and Protein Interfaces Using RosettaBackrub Flexible Backbone Design
July 18, 2011 Colin Smith, Tanja Kortemme
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10.1371/journal.pone.0020161

PLOS ONE RosettaScripts: A Scripting Language Interface to the Rosetta Macromolecular Modeling Suite
June 24, 2011 Sarel Fleishman, Andrew Leaver-Fay, Jacob Corn, Eva-Maria Strauch, Sagar Khare, Nobuyasu Koga, Justin Ashworth, Paul Murphy, Florian Richter, Gordon Lemmon, Jens Meiler, David Baker
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Chris Poultney, Richard Bonneau

PLOS ONE A Generic Program for Multistate Protein Design
July 6, 2011 Andrew Leaver-Fay, Ron Jacak, Peter Stranges, Brian Kuhlman
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10.1371/journal.pone.0020450

PLOS ONE Modeling Symmetric Macromolecular Structures in Rosetta3
June 22, 2011 Frank DiMaio, Andrew Leaver-Fay, Phil Bradley, David Baker, Ingemar Andre
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10.1371/journal.pone.0020872

PLOS ONE Anchored Design of Protein-Protein Interfaces
June 17, 2011 Steven Lewis, Brian Kuhlman
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10.1371/journal.pone.0020044

PLOS ONE Four Small Puzzles That Rosetta Doesn’t Solve
May 20, 2011 Rhiju Das
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10.1371/journal.pone.0019230

PLOS ONE De Novo Enzyme Design Using Rosetta3
May 16, 2011 Florian Richter, Andrew Leaver-Fay, Sagar Khare, Sinisa Bjelic, David Baker
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10.1371/journal.pone.0018934

PLOS ONE Rosetta FlexPepDock ab-initio: Simultaneous Folding, Docking and Refinement of Peptides onto Their Receptors
April 29, 2011 Barak Raveh, Nir London, Lior Zimmerman, Ora Schueler-Furman